By Jaimi Gray, UTCT, University of Texas https://qubeshub.org/publications/2760/1 A brief introduction to educational resources associated with the oVert project. This resource includes the slides and recording of Dr. Jaimi Gray’s presentation as well as links to all of the resources […]
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Gray’s Colors of Skull Anatomy
By Jaimi Gray, UTCT, University of Texas http://www.graysvertebrateanatomy.com/work/colorsofskullanatomy/ Standardized color scheme for rendering skulls.
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University of Florida DeLeon Lab Data Post-processing Modules
By Valeria DeLeon and Rose Bryson, The University of Florida https://www.youtube.com/@deleonlab/videos Tutorials for analyzing and processing CT data in 3D Slicer.
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Data Processing Basics in VG Studio
By April Neander, The University of Chicago https://youtu.be/oWecQ6AmN2A Chapter 12 of the University of Chicago PaleoCT training course. Covers importing data, navigation, reorientation, cropping, and merging scans in VGStudio.
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3D Digital Reconstruction
By April Neander, The University of Chicago https://youtu.be/HaVuQSQh4Lg Chapter 11 of the University of Chicago PaleoCT training course. Covers reconstruction tools available on Datos, such as AGC, cropping, and other modules.
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SlicerMorph
By SlicerMorph Team, Murat Maga, Adam Summers, and Doug Boyer https://slicermorph.github.io/ Github page for 3D Slicer plugin that streamlines data import, visualization, measurement, annotation, and geometric morphometric analysis on 3D data, including volumetric scans (CTs and MRs) and 3D surface […]
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3D Slicer Training
By 3D Slicer https://www.slicer.org/wiki/Documentation/Nightly/Training 3D Slicer’s Wiki page of tutorials.
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MICRO Instructions for Working with Image Stacks in FIJI (FIJI Is Just ImageJ)
By Manon Wilson, Paul Gignac, and Claire Terhune from MICRO, University of Arkansas https://micro.uark.edu/micro-instructions-for-working-with-image-stacks-in-fiji-fiji-is-just-imagej/ Tips and tricks for manipulating CT-scanner image stacks using the free software ImageJ.
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Seattle Children’s Research Institute
By Murat Maga, Seattle Children’s Research Institute https://faculty.washington.edu/maga/SCRI_MicroCT/ Facility Website that offers CT scanning services, hosts mouse CT Data for download, 3D Visualizations, and other useful documents.