By Jaimi Gray, UTCT, University of Texas http://www.graysvertebrateanatomy.com/work/colorsofskullanatomy/ Standardized color scheme for rendering skulls.
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University of Florida DeLeon Lab Data Post-processing Modules
By Valeria DeLeon and Rose Bryson, The University of Florida https://www.youtube.com/@deleonlab/videos Tutorials for analyzing and processing CT data in 3D Slicer.
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Data Processing Basics in VG Studio
By April Neander, The University of Chicago https://youtu.be/oWecQ6AmN2A Chapter 12 of the University of Chicago PaleoCT training course. Covers importing data, navigation, reorientation, cropping, and merging scans in VGStudio.
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3D Digital Reconstruction
By April Neander, The University of Chicago https://youtu.be/HaVuQSQh4Lg Chapter 11 of the University of Chicago PaleoCT training course. Covers reconstruction tools available on Datos, such as AGC, cropping, and other modules.
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SlicerMorph
By SlicerMorph Team, Murat Maga, Adam Summers, and Doug Boyer https://slicermorph.github.io/ Github page for 3D Slicer plugin that streamlines data import, visualization, measurement, annotation, and geometric morphometric analysis on 3D data, including volumetric scans (CTs and MRs) and 3D surface […]
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3D Slicer Training
By 3D Slicer https://www.slicer.org/wiki/Documentation/Nightly/Training 3D Slicer’s Wiki page of tutorials.
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MICRO Instructions for Working with Image Stacks in FIJI (FIJI Is Just ImageJ)
By Manon Wilson, Paul Gignac, and Claire Terhune from MICRO, University of Arkansas https://micro.uark.edu/micro-instructions-for-working-with-image-stacks-in-fiji-fiji-is-just-imagej/ Tips and tricks for manipulating CT-scanner image stacks using the free software ImageJ.
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Seattle Children’s Research Institute
By Murat Maga, Seattle Children’s Research Institute https://faculty.washington.edu/maga/SCRI_MicroCT/ Facility Website that offers CT scanning services, hosts mouse CT Data for download, 3D Visualizations, and other useful documents.
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MICRO introduction to diceCT
By Claire Terhune and Paul Gignac at MICRO, University of Arkansas https://micro.uark.edu/introtodicect/ Tips and tricks for diceCT staining natural history specimens, which allows for the visualization of soft-tissue structure in CT scans.